IAP Political Forum
December 01, 2008, 02:19:34 PM *
Welcome, Guest. Please login or register.
Did you miss your activation email?

Login with username, password and session length
News: Welcome to the new "IAP 2.0" -- please re-register before continuing to post.
 
   Home   Blog Forum   Help Search Chat Login Register  
Digg This!
Pages: 1 2 [3] 4   Go Down
  Print  
Author Topic: Truth be Told about Human Chimp DNA  (Read 1355 times)
tejtej
ta terjast
Global Moderator
Full Member
*****

Karma: +22/-2
Posts: 140


a.k.a. COS


View Profile
« Reply #30 on: November 04, 2007, 09:42:16 PM »

Can you provide an example of a new binding site anywhere throughout the entire span of organisms?

See above, DNA polymerase in procariotes and eucariotes.

Isn't this just an excuse?  It sounds like the complaint, "I just need more time to find the missing processes and new interactions".

By far the most important excuse is that I am microbiologist and not really good at mammalian examples.
Logged

Slovenc, tvoja zemlja je zdrava in pridnim nje lega najprava.
Pólje, vinograd, gora, morjé, ruda, kupčija tebe rede.
scripto
Newbie
*

Karma: +7/-6
Posts: 38



View Profile
« Reply #31 on: November 05, 2007, 04:37:30 AM »

RF said:

Quote
I would be interested in a detailed description of each potential step that may have went into generation of these systems by evolutionary processes.

I would be interested in any identified design process or event.

Genetic engineering provides a number of design processes that apply making genetic alterations.  Unlike evolutionary processes these design processes add new functionality very quickly.

Where is your evidence? Genetic engineering analagous to human endeavors requires advanced technologies. What did the designer(s) do? Snap their fingers? Given the obvious progression of life on earth what other explanation can you offer other than descent with modification?
Logged

3.5 billion years from a puddle of goo
Reasoned Faith
Hero Member
*****

Karma: +146/-165
Posts: 893


View Profile
« Reply #32 on: November 06, 2007, 03:24:52 AM »

Can you provide an example of a new binding site anywhere throughout the entire span of organisms?

See above, DNA polymerase in procariotes and eucariotes.

These examples don't seem to be observed, or repeated in experiments.  Can I assume they are presumed or Inferred?  I don't understand how biologists feel justified in suspending the scientific method.  I am aware of the speculations.  I was hoping to understand what has been confirmed.
Logged
tejtej
ta terjast
Global Moderator
Full Member
*****

Karma: +22/-2
Posts: 140


a.k.a. COS


View Profile
« Reply #33 on: November 06, 2007, 08:08:38 AM »

Can you provide an example of a new binding site anywhere throughout the entire span of organisms?

See above, DNA polymerase in procariotes and eucariotes.

These examples don't seem to be observed, or repeated in experiments.  Can I assume they are presumed or Inferred?  I don't understand how biologists feel justified in suspending the scientific method.  I am aware of the speculations.  I was hoping to understand what has been confirmed.

Essentially, you don't like some examples because the new binding site is not "new" (it is) and other because they include organisms with millions of years since divergence.

De gustibus non est disputandum.
Logged

Slovenc, tvoja zemlja je zdrava in pridnim nje lega najprava.
Pólje, vinograd, gora, morjé, ruda, kupčija tebe rede.
Reasoned Faith
Hero Member
*****

Karma: +146/-165
Posts: 893


View Profile
« Reply #34 on: November 06, 2007, 04:57:30 PM »

Can you provide an example of a new binding site anywhere throughout the entire span of organisms?

See above, DNA polymerase in procariotes and eucariotes.

These examples don't seem to be observed, or repeated in experiments.  Can I assume they are presumed or Inferred?  I don't understand how biologists feel justified in suspending the scientific method.  I am aware of the speculations.  I was hoping to understand what has been confirmed.

Essentially, you don't like some examples because the new binding site is not "new" (it is) and other because they include organisms with millions of years since divergence.

De gustibus non est disputandum.

Fair enough.  I will accept the sickle cell Hb example for now and we can look even closer at it and its characteristics.  Surly you admit that this example is nothing like the examples of the thousands of functioning binding sites we actually observe in a properly operating cell.  The nanomachine site I offered earlier provides a glimpse into the functional binding sites of which I speak.

Speculations separated by millions of years are not consistent with the requirements of the scientific method and are not causally sufficient.  We observe similarities and we can even speculate that one was derived from the other, but we cannot say how it change took place.  It is pure speculation to claim evolution did it when experiments seem to indicate evolution cannot do it.
Logged
Reasoned Faith
Hero Member
*****

Karma: +146/-165
Posts: 893


View Profile
« Reply #35 on: November 10, 2007, 06:33:47 AM »

Sickle Hb is a special case of protein-protein interaction.  The interaction that is exposed by by the substitution is weak as compared to the interactions one encounters in fully functional protein machines.  It is nearly one hundred times weaker than the typical binding locations and its dissociation constant is quite high (Ivanova, M., et al., 2000,  Nonideality and the nucleation of sickle hemoglobin, Biophysics Journal).  The only reason it has the effect it does is because the red blood cell unlike nearly all other cells has nearly 90% of all its protein content as one protein, namely hemoglobin.  This high concentration compensates for the weak association and allows the hemoglobin to congeal into an incoherent web of gelatin in contrast to the protein interactions one encounters in functional systems.

Clearly the difference between sickle hemoglobin and all the others is stark.  It is clear that this is a case of an accident as we all acknowledge mutations are.  The others have the strong appearance of intentional design and we have yet to observe how unintentional constrained chance process can build coherent systems when the overwhelming number of permutations are incoherent (systems of proteins involve permutation in the range of 10^50 to 10^40000).
Logged
tejtej
ta terjast
Global Moderator
Full Member
*****

Karma: +22/-2
Posts: 140


a.k.a. COS


View Profile
« Reply #36 on: November 10, 2007, 08:20:07 AM »

Sickle Hb is a special case of protein-protein interaction.

Considering that protein-protein interaction are difficult to study (=expensive and time consuming) most of studied interactions are special cases. Except antigen-antibody.

Just asking, but why did you focus on protein-protein and not protein-DNA?
Logged

Slovenc, tvoja zemlja je zdrava in pridnim nje lega najprava.
Pólje, vinograd, gora, morjé, ruda, kupčija tebe rede.
Reasoned Faith
Hero Member
*****

Karma: +146/-165
Posts: 893


View Profile
« Reply #37 on: November 10, 2007, 11:36:17 AM »

Sickle Hb is a special case of protein-protein interaction.

Considering that protein-protein interaction are difficult to study (=expensive and time consuming) most of studied interactions are special cases. Except antigen-antibody.

True enough, but I'm not sure we are using the term in the same sense.

Quote
Just asking, but why did you focus on protein-protein and not protein-DNA?

I used it because the examples seemed easier to illustrate than the gene and regulatory control examples and because the context seemed easier to describe as well.  When we deconstruct developmental control systems they look as much like electrical control circuits and logic as any of the control systems I've built for process control  so I am happy to entertain them as well.

Either way the conclusions is the same and that is that modification by evolutionary processes along with natural selection are not observed to build the kind of systems we find when we peer into the functioning cell.  Instead we find evolution damaging coherent funtion, generating incoherent byproducts and only preserving these changes when selection pressure is such that the damage also disrupts an even more damaging system
« Last Edit: November 10, 2007, 01:57:43 PM by Reasoned Faith » Logged
tejtej
ta terjast
Global Moderator
Full Member
*****

Karma: +22/-2
Posts: 140


a.k.a. COS


View Profile
« Reply #38 on: November 10, 2007, 12:43:56 PM »

Quote
Sickle Hb is a special case of protein-protein interaction.
Quote
Considering that protein-protein interaction are difficult to study (=expensive and time consuming) most of studied interactions are special cases. Except antigen-antibody.
Quote
True enough, but I'm not sure we are using the term in the same sense.

Antibody - protein, antigen - for example foreign proteins.

Instead we find evolution damaging coherent funtion, generating incoherent byproducts and only preserving these changes when selection pressure is such that the damage also disrupts an even more damaging system

"Damaging coherent function" is a relative term. How about bacteria gaining resistance against antibiotic? Is that a good example of gaining function by mutation?
« Last Edit: November 10, 2007, 01:06:21 PM by tejtej » Logged

Slovenc, tvoja zemlja je zdrava in pridnim nje lega najprava.
Pólje, vinograd, gora, morjé, ruda, kupčija tebe rede.
jpn of Seattle
Hero Member
*****

Karma: +241/-233
Posts: 2,021



View Profile
« Reply #39 on: November 10, 2007, 01:29:34 PM »

Quote from: Reasoned Faith
The article below describes how genetics researchers are backing away from the 1% difference claim but it does not discuss the implications directly.  I have added that here for additional possible discussion.

Truth be Told about Human Chimp DNA

So what's the subtext to this discussion? That evolution is a myth? That humans were created 4,354 years ago last Tuesday?
Logged

What you got is everything-and I mean everything—run by the political arm. It’s the reign of the Mayberry Machiavellis. --John DiIulio, former White House official
Reasoned Faith
Hero Member
*****

Karma: +146/-165
Posts: 893


View Profile
« Reply #40 on: November 11, 2007, 05:12:06 AM »

Quote from: Reasoned Faith
The article below describes how genetics researchers are backing away from the 1% difference claim but it does not discuss the implications directly.  I have added that here for additional possible discussion.

Truth be Told about Human Chimp DNA

So what's the subtext to this discussion? That evolution is a myth? That humans were created 4,354 years ago last Tuesday?

No.  The subtext is that known evolutionary processes can't account for the changes we observe between even classes, orders, families, and generas
Logged
daedalus 2.0
Hero Member
*****

Karma: +69/-397
Posts: 1,145



View Profile
« Reply #41 on: November 11, 2007, 08:10:12 PM »

except that they can, but that is neither here not there for the religionist on a campaign to burn science on the pyre.
Logged

\\\\"SUCK IT, JESUS!\\\\" Kathy Griffin
\"Hitler burns Anne Frank for a day, and it\'s Evil.
God burns Anne Frank for eternity, and it\'s Just.\"Anon
jpn of Seattle
Hero Member
*****

Karma: +241/-233
Posts: 2,021



View Profile
« Reply #42 on: November 11, 2007, 08:11:38 PM »

except that they can, but that is neither here not there for the religionist on a campaign to burn science on the pyre.

Yes, he is also convinced that everyone but he misunderstands the chemistry behind the origin of life, and all their Ph.D.s are but a piffle.

Here's a snippet from a texbook that RF referenced in the SETI thread:

Quote
As far as I am concerned, I am completely convinced that life evolved and continues to evolve, under natural conditions. But don't take my word for it. There is plenty of evidence.

Micro-organisms are evolving all around us. Two examples of immediate concern to everyone are

  • The HIV virus: press release on new research from Massachusetts General Hospital, July 20, 2001;
  • and Staphylococcus aureus, the "staph" bacterium; press release on new research from NIH, July 10, 2001.

Now frankly, I don't care whether you accept that evidence or not. I do care that doctors do, because if they don't, people won't get the best treatment. Fortunately, most people in the world can't understand why a few fundamentalist Christian religions, mostly based in the USA, have a problem with evolution, so this is not really a global problem. It is, however, a very real local problem for educators in the United States who are trying to produce students who can compete in the global job market in biological and medical science in the 21st century! source

But I must admit, RF is one of the most curteous posters I disagree with.
« Last Edit: November 11, 2007, 08:22:59 PM by jpn of Seattle » Logged

What you got is everything-and I mean everything—run by the political arm. It’s the reign of the Mayberry Machiavellis. --John DiIulio, former White House official
Reasoned Faith
Hero Member
*****

Karma: +146/-165
Posts: 893


View Profile
« Reply #43 on: November 11, 2007, 08:56:36 PM »

except that they can, but that is neither here not there for the religionist on a campaign to burn science on the pyre.

You can demonstrate with empirical evidence that your statement is true?  You and I both know you cannot.  You have presupposition, a narrative, a few boxes of similar looking fossils, and some similar genes and DNA strands and that is it.  But even the fossils and DNA are not evidence of your claim since neither tells us anything of how they came to appear the way they do.  Sorry barney the scientific method demands more.  Observed evolutionary processes have not demonstrated that they are capable of generating the large quantities of new biological information required to transform a community of organisms into a new genera in the timeframes indicated by the presumed life-span of this planet.  Perhaps you can tell me how evolutionary processes generate new biological information.  Next you can tell me what rate it does so.  No you can't answer these questions either.

Yes, he is also convinced that everyone but he misunderstands the chemistry behind the origin of life, and all their Ph.D.s are but a piffle.

You seem to have a bad habit of presuming and ascribing beliefs to your opponent.  I have not made this claim and do not agree with it.

Quote
Here's a snippet from a texbook that RF referenced in the SETI thread:

Quote
As far as I am concerned, I am completely convinced that life evolved and continues to evolve, under natural conditions. But don't take my word for it. There is plenty of evidence.

Microorganisms are evolving all around us. Two examples of immediate concern to everyone are

  • The HIV virus: press release on new research from Massachusetts General Hospital, July 20, 2001;
  • and Staphylococcus aureus, the "staph" bacterium; press release on new research from NIH, July 10, 2001.

Now frankly, I don't care whether you accept that evidence or not. I do care that doctors do, because if they don't, people won't get the best treatment. Fortunately, most people in the world can't understand why a few fundamentalist Christian religions, mostly based in the USA, have a problem with evolution, so this is not really a global problem. It is, however, a very real local problem for educators in the United States who are trying to produce students who can compete in the global job market in biological and medical science in the 21st century!

http://www-geology.ucdavis.edu/~cowen/HistoryofLife/creator.html

I do not disagree with the words quoted here either.  I am quite aware that microorganisms are evolving in response to drug selection pressures.
Logged
Pages: 1 2 [3] 4   Go Up
  Print  
 
Jump to:  

Powered by MySQL Powered by PHP Powered by SMF 1.1.4 | SMF © 2006-2007, Simple Machines LLC
Joomla Bridge by JoomlaHacks.com
Valid XHTML 1.0! Valid CSS!
Page created in 0.096 seconds with 27 queries.